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Topic: An ancient retrovirus is resurrected

From: Joe Smith
Location: Buffalo NY
Date: 02/21/2007

Greg did you see this bit of news? When I saw it I immediately thought of your novel "Darwin's Radio". Keep up the good work!!

An ancient retrovirus is resurrected

Human cells expressing structural proteins from the resurrected retrovirus, HERV-KCON, build retrovirus-like particles and release them from the cell membrane, just as cells infected with a true retrovirus do.

Retroviruses have been around longer than humanity itself. In fact, the best-known family member, HIV, is a relative youngster, with its first known human infections occurring sometime in the mid-20th century.

But although many retroviruses went extinct hundreds of thousands or millions of years ago, researchers studying the pathogens dont use the traditional tools of paleontologists: They need look only as far as our own DNA.

Retroviruses infect cells and replicate by inserting their DNA into their host cells genome. If that cell happens to be a germ cell, such as a sperm, an egg or their precursors, then the retroviral DNA is inherited by offspring just like a normal gene. Humans have many defunct retroviruses deposited in our DNA, remnants of ancient retroviruses that replicated in our ancestors millions of years ago. Now, researchers have brought one of those retroviruses back to life.

In our DNA, theres a fossil record of retroviruses that used to infect us, says Paul Bieniasz, associate professor and head of the Laboratory of Retrovirology at Rockefeller University and the Aaron Diamond AIDS Research Center.

In fact, about eight percent of human DNA is made up of retroviral sequences. Bieniasz and Youngnam Lee, a graduate student in the Bieniasz lab, have excavated some of that DNA and  in an attempt to better understand how humans and retroviruses co-evolved  they have resurrected an ancient retrovirus, one that can create new viral particles and infect human cells. They describe their work in a paper published by PLoS Pathogens last month.

The extinct retroviruses embedded in our DNA cant reproduce because of mutations in one or more of their genes. The younger of these human endogenous retroviruses (or HERVs) have fewer changes, and judging by the paucity of genetic alterations, at least one subfamily  HERV-K  was likely still active less than a few hundred thousand years ago. Different members of this subfamily have slightly different mutations. But as of a few months ago, Bieniasz says, there was no replication-competent form of this virus.

To eliminate those mutations that kept HERV-K from replicating, the two researchers deduced a genetic sequence that was a consensus of 10 different HERV-K proviruses and synthesized the whole viral genome from scratch. Then, they took that sequence (which they dubbed HERV-KCON) and inserted it into cultured human cells to see if it would result in the creation of HERV-K structural proteins. Their consensus sequence resulted in not only functional proteins, but in a retrovirus that was capable of creating new viral particles and integrating itself into a host cells genome. This is the first time this has been done with a viral genome that was effectively dead, and now is alive  or at least has all the functions that suggest it should replicate, Bieniasz says.

The project began, Lee says, because certain human and non-human primate cells produce proteins that appear to block HIV from replicating. And the question is where did the proteins come from? she asks. By studying these extremely old viruses, we can tap into what happened in our ancestors millions and millions of years ago.

Citation: Public Library of Science Pathogens 3(1): e10 (January 26, 2007)

Re: An ancient retrovirus is resurrected

From: Greg Bear
Date: 02/26/2007

Thanks, Joe! Fascinating research. Maybe we could call this a Frankenvirus? Plucked from the old viral "graveyard" and sewn together, brought back to life! Though these and other anvient provirus sequences get expressed with surprising regularity.

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